Conformer Opacity - defines how transparent are the non-reference conformers.Show Mol-Info - toggles the visibility of molecular information in tiled structure viewer.Show Pharmacophores - toggles the visibility of pharmacophores.Note, that the referenceĬonformer (the first visible) is always shown opaque regardless of this flag. Transparent Conformers - toggles the transparency of conformer overlaps.Hide Box - controls the visibility of virtual box containing the molecule.Hide Coordinate System - toggles the visibility of reference coordinate system.Mode objects appear at the same scale regardless of distance in perspective mode further objects are scaled down. Orthogonal Projection - toggles between perspective and orthogonal modes of projection.User may chose not to scale, or scale only once at the loading time of the molecule, or to scale relative to the first conformer shown, or use all conformers for scaling. Scale Strategy - toggles between different scaling modes of the molecule into the viewing area.Smaller values of viewing angle turn the appearance of the molecule intoįlatter projection with less perspective scaling. To looking from the objective of an ultra-wide angle camera and show nearby objects scaled bigger andįurther objects appearing smaller. Viewing Angle - controls the amount of perspecive in the projection.Background Color - specifies the color of the 3D viewer window not occupied by the molecule.

One may toggle theĪmbient light, emmisivitiy of atomic and bond surfaces, add or remove highlights and shininess. Light Model - allows to use different lighting on the molecular scene.The speed of keyboard and mouse rotations. Image Quality - higher values generate images of greater qualities, but may decrease.

Atom visualizer 3d